I am a neuroscientist interested in linking information processing in retinal circuits to downstream visual functions. My goal is to understand the many rarer, uncharacterized retinal neurons. That most of the ~20 ganglion cell types and >40 amacrine cell types have no known function indicates we may only understand a small fraction of the visual processing occurring in our retina, which is a thin sheet of neural tissue at the back of the eye that provides the sole source of visual information to the brain. Addressing this gap in knowledge is increasingly urgent. Our basic science understanding of what our retinas tell our brains is a key limitation to further development of devices that aim to restore vision in the blind by replacing the retinal output, such as retinal prosthetics.
I received a Ph.D. in Neuroscience from the Neitz lab at the University of Washington in Seattle where I studied primate retinal circuits encoding color and motion. My research combined 3D reconstructions of retinal neurons from electron microscopy with electrophysiology, computational models and psychophysics. A common theme was the idea that the primate retina does not merely transmit visual information to the brain like a camera, but instead pre-processes that information to extract features relevant to downstream visual functions (e.g., the color of the sky for circadian photoentrainment, global motion direction for gaze-stabilizing reflexes). My work added to increasing evidence that the computations defining our visual perception and behavior begin in the retina rather than the cortex.
Currently, I'm a postdoctoral fellow studying foveal ganglion cell structure and function in the living eye with adaptive optics, calcium imaging and circuit tracing in the lab of Dr. David Williams at the University of Rochester. The goal of my postdoctoral research is to classify the full diversity of primate ganglion cells in the fovea, a critical but understudied region of the retina responsible for most conscious vision. Because I am performing this classification in the living eye, I can study the same cells for years and directly link their responses to visual perception and behavior. As such, my classification will form the foundation for the work I intend to do in the future, in my own lab: investigating individual cell types in detail and determining their roles in vision.
Before graduate school, I spent a year as a post-bac at the NIH studying zebrafish cone photoreceptor development in the lab of Dr. Ralph Nelson. I graduated from Dickinson College with a B.S. in Neuroscience.
My full CV can be found here.
Godat, T., Cottaris, N., Patterson, S.S., Kohout, K., Parkins, K., Yang, Q., Strazzeri, J.M., McGregor, J.E., Brainard, D.H., Merigan, W.H., Williams, D.R. (2022) In vivo chromatic and spatial tuning of foveolar retinal ganglion cells in Macaca fascicularis . PLoS ONE, 17(11): e0278261
Nelson, R.F., Balraj, A., Suresh, T., Elias, L.J., Yoshimatsu, T., Patterson, S.S. (2022) Over-expression of thyroid hormone receptor B2 in zebrafish changes the distribution of cone signals. eNeuro, 9(6), ENEURO.0326-22.2022
Bordt, A.S., Patterson, S.S., Kuchenbecker, J.A., Mazzaferri, M.A., Yearick, J.N., Ogilvie, J.M., Neitz, J., Marshak, D.W. (2022) Synaptic inputs to displaced intrinsically-photosensitive retinal ganglion cells in macaque retina. Scientific Reports, 12, 15160
Patterson, S.S., Bembry, B.N., Mazzaferri, M.A., Neitz, M., Rieke, F., Soetejdo, R., Neitz, J. (2022) Conserved circuits for direction selectivity in the primate retina. Current Biology, 32(11), 2529-2538
Patterson, S.S., Neitz, M., Neitz, J. (2021) S-cone circuits in the primate retina for non-image-forming vision. Seminars in Cell & Developmental Biology, 126, 66-70
Bordt, A.S., Patterson, S.S., Girresch, R.J., Perez, D., Tseng, L., Anderson, J.R., Mazzaferri, M.A., Kuchenbecker, J.A., Gonzales-Rojas, R., Roland, A., Tang, C., Puller, C., Chuang, A.Z., Ogilvie, J.M., Neitz, J., Marshak, D.W. (2021) Synaptic inputs to broad thorny ganglion cells in macaque retina. Journal of Comparative Neurology, 529(11), 3098-3111
Patterson, S.S., Mazzaferri, M.A., Bordt, A.S., Chang, J., Neitz, M., Neitz, J. (2020) Another Blue-ON ganglion cell in the primate retina. Current Biology, 30(23), 1409-1410
Patterson, S.S., Kuchenbecker, J.A., Anderson, J.R., Neitz, M., Neitz, J. (2020) A color vision circuit for non-image-forming vision in the primate retina. Current Biology, 30(7), 1269-1274
- Rivera, A.M. & Huberman, A.D. (2020) A chromatic retinal circuit encodes sunrise and sunset for the brain. Current Biology, 30(7), R316-R318
- Press release and video interview with the UW Newsroom: Let there be circadian light
Neitz, A., Jiang, X., Kuchenbecker, J.A., Domdei, N., Harmening, W., Yan, H., Yeonan-Kim, J., Patterson, S.S., Neitz, M., Neitz, J., Coates, D.R., Sabesan, R. (2020) The effect of cone spectral topography on chromatic detection sensitivity. Journal of the Optical Society of America A, 37(4), A245-255
Patterson, S.S.*, Bordt, A.S.*, Girresch, R.J., Linehan, C.M., Bauss, J., Yeo, E., Perez, D., Tseng, L., Navuluri, S., Harris, N.B., Matthews, C., Anderson, J.R., Kuchenbecker, J.A., Manookin, M.B., Ogilvie, J.M., Neitz, J., Marshak, D.W. (2019) Wide-field amacrine cell inputs to ON parasol ganglion cells in the primate retina. Journal of Comparative Neurology, 528(9), 1588-1598. (* co-first author)
Patterson, S.S., Kuchenbecker, J.A., Anderson, J.R., Bordt, A.S., Marshak, D.W., Neitz, M., Neitz, J. (2019) An S-cone circuit for edge detection in the primate retina. Scientific Reports, 9, 11913
Patterson, S.S., Neitz, M., Neitz, J. (2019) Reconciling color vision models with midget ganglion cell receptive fields. Frontiers in Neuroscience, 13, 865
Neitz, M., Patterson, S.S., Neitz, J. (2019) Photopigment genes, cones and color update: Disrupting the splicing code causes a diverse array of vision disorders. Current Opinion in Behavioral Science, 30, 60-66
Nelson, R.F., Balraj, A., Suresh, T., Torvund, M., Patterson, S.S. (2019) Strain variations in opsin peaks in situ during zebrafish development. Visual Neuroscience, 36, E010
Bordt, A.S., Perez, D., Tseng, L., Liu, W.S., Neitz, J., Patterson, S.S., Famiglietti, E.V., Marshak, D.W. (2019) Synaptic inputs and connectivity of a sparsely branched ganglion cell in rabbit retina. Visual Neuroscience, 36, E004
Manookin, M.B., Patterson, S.S., Linehan, C.L. (2018) Neural mechanisms mediating motion sensitivity in parasol ganglion cells of the primate retina. Neuron, 97(6), 1327-1340
- Murphy-Baum, B.L. & Awatramani, G.B. (2018) An old neuron learns new tricks: Redefining motion processing in the primate retina. Neuron, 97(6), 1205-1207
Neitz, M., Patterson, S. S., Neitz, J. (2020) The genetics of cone opsin based vision disorders. The Senses: A Comprehensive Reference, 2nd edition, Vol. 1, 493-507
Neitz, J., Neitz, M., Kuchenbecker, J.A., Patterson, S.S., Neitz, A. (2022) Lighting devices, systems, methods for stimulating circadian rhythms. 17/612,061
Patterson, S.S., Neitz, M., Neitz, J. (2019) The spectral sensitivity of the neurons mediating black and white. bioRxiv
Connectomics: 3D analysis and visualization toolbox for serial electron microscopy. (SBFSEM-tools)
Adaptive Optics Object model and framework for organizing experiment data, metadata and code (AOData)
Electrophysiology: Stimulus protocols and online analyses for Symphony and Stage (patterson-package).
Optical Coherence Tomography (OCT): Semi-automated segmentation of retinal layers and choroid (OCT-tools).
HDF5: Toolbox of high-level functions for working with HDF5 files in MATLAB. (h5tools-matlab
Open Source Data
- Patterson_Neitz archive on Neuromorpho contains reconstructions from: Patterson et al (2019) Sci Rep; Patterson et al (2020a) Curr Biol; Patterson et al (2020b) Curr Biol; Patterson, Bordt et al (2020) J Comp Neurol; Patterson et al (2022) Curr Biol
- Github repositories for papers using SBFSEM-tools: Patterson et al (2019) Sci. Rep.; Patterson, Bordt et al (2019) J. Comp. Neurol.; Bordt et al (2019)Vis. Neurosci.
- OSF dataset for Godat et al (2022) PLoS ONE
University of Rochester: Center for Visual Science, Institute of Optics, Flaum Eye Institute, Advanced Retinal Imaging Alliance (ARIA).
University of Washington: Neitz lab, Neuroscience Graduate Program